It is sad to see this problem continue to happen as we have been over it many times on this list.
It is very simple to use the several plastic boxes with about 24 bins each, they all work, you can use the cheap ones from Harbor Freight at about $5 or some of the nicer ones from Lowe's or Home Depot but the key is to do as Van's tells us and inventory each bag and while we do that put each item in its bin with a label as to exactly what it is so that when the plans say to get a K1000-3 you do not need to be able to pick them out of a mixed bag of plate-nuts. You read the label and use the correct part. When you count the parts as you sort the bag it is simple to correctly identify the item as you will have 6 of one and 20 of the next.
This organization can be done many ways, I used pill bottles for the first tail kit and it worked just fine, then I could see that the multi bin plastic boxes worked better, but the important thing is organization of the parts so that you can pick parts by their nomenclature from a bin that only has that specific part in it and the bins are organized in such a way that even if you do not know exactly what the part looks like you can go to the correct bin and get the right part.
The above saves a great deal of time in just getting the part called out on the drawing, not to mention the re-work required to replace a plate-nut that is the wrong size in an area that you can no longer get to.
Organize your parts in a way that works for you, it will save you a lot of time and money in the end.
Best regards,
Vern