I have done the following for my wiring/plumbing routing:
ELT, strobe power, taillight are in the center tunnel section (along with manual trim cable in the other set of holes)
Strobe lines from flasher box to the wings are routed up each side through 1/4" bushings in the outer bay (where the flap pushrods go through the fuselage)
For static, I drilled an additional set of holes through all bulkheads including the forward side of the baggage bulkhead, then ran the tubing vertically up (pilot's side) to under the top of the upper armrest (don't know what this is offically called, but its the deck you step over in entering the cockpit). From here, it runs above the 904 center section bulkhead without a hole - there is plenty of room in the corner above the center section to run wiring and tubing - and then behind the panel.
I will route my com antenna cable on the passenger side above the 904 bulkhead, probably drill a 1/4" hole in the crossmember that the seats rest on, and continue the routing along that deck to behind the baggage. My antenna is on top, but you could easily put the cable to the bottom of the fuse from there as well.
Other electrical stuff I ran down either side of the fuselage from the panel (basically where the fuel vent is (in my case was, since I relocated that further forward) and through the 5/8" holes in the 904 and gear mounts then out into the wing. This includes wing lighting, nav wingtip antenna, and some other wing electrical stuff. If/when I put in a servo for autopilot, the wiring will go this route.
Hope this gives you some ideas. Sorry I cannot comment on additional holes in the 904, though I am aware of others who have done this.
FWIW, I also removed the snap bushings from the center holes in the 904 and put in a length of 5/8" OD irrigation tubing from near the firewall back through both center section members. I also put some of this tubing in various other places, including the wings. This makes snaking wiring MUCH easier.
Once I'm done with all the wiring, I plan to put spiral wrap around any bundles that might be accidentally caught on something (foot in the cockpit, etc.) and to keep them neat.
greg