I discovered that a couple of wires had been inserted into the wrong pins in the original Optional D-Sub Connector. This is part of the Fuselage Wiring Harness that comes in the Finishing Kit. Although I'd purchased my Finishing Kit in 2010, I didn't discover the problem until last Friday, 3/30/2012.
As part of my current Skyview Upgrade, I was inserting two wires from the AP Disconnect Button into Pins 9 & 12 of the original Optional D-Sub Connector as described on Page 31-07 (actually, this is no change from the original design. I had put off doing it while waiting for Skyview). That's when I discovered that two wires had already been inserted into Pins 9 & 12. After digging up a wiring schedule spreadsheet on vansairforce.net and studying it for awhile, I determined that the wire in Pin 9 shoud be moved to the empty Pin 10 and the wire in Pin 12 should be moved to the empty Pin 11.
I have no confirmation that my re-pinning is correct, but feel rather confident about it based on the wiring schedule spreadsheet. My concern is that I found this problem only because the plans directed me to insert wires into those pins. Otherwise, I would've never found it.