I've handled them in various ways, the latest project I mounted both the Lightspeed Ign module and VP-X in layered brackets to the ribs, access thru panels cut in front of the w/shield.
I'm thinking for future projects with multiple modules, I'd create a larger shelf between the firewall & subpanel that would be hinged in the front & secured with 2 or 3 fasteners in the back. The whole panel would swing down for access. Considerations- be mindfull of obsticles like throttle cables, brake lines, etc., provide good grounding to this panel as some modules may require it, leave room for future toys.
A couple thoughts for Larry's installation- consider moving the Dynon back-up battery forward & mounting the transponder where the battery is currently mounted (I'm assuming this is a Dynon installation & the xpdr will fit in that position) as xpdrs are maintenance items & battery will probably never have to be touched again.